Persistent repository
Anyone can register his/her text annotations in PubAnnotation. The contributors will retain their full right over their annotation data. PubAnnotation will only help data holders share their data with others.
Alignment
Due to the powerful alignment algorithm implemented in PubAnnotation, annotation data will be automatically aligned with others, on upload. It means your annotation data will become immediately available for comparative or integrative analysis with others.
Programmable API
All the annotation data on PubAnnotation are accessable through REST API and dereferenceable URIs. It means, you don't need to download whole data sets any more, as your program can directly access the data whenever necessary.
Access aligned annotations
URL
https://pubannotation.org/docs/sourcedb/PubMed/sourceid/10022882/spans/606-710/annotations
Gene name grounding
(PubTator)
Semantic annotation
(MetaMap and SemRep)
Coreference annotation
(Genia-Medco)
Dependency parsing
(Enju)
Upload annotation
HTTP Post
curl -user username:password -H "content-type:application/json" -d @annotations.json https://pubannotation.org/docs/sourcedb/PubMed /sourceid/10022882/annotations.json